YANG Guo-wei.Bioinformatic Analysis of Heilongjiang Wild Boar Mitochondria D-Loop[J].HEILONGJIANG AGRICULTURAL SCIENCES,2010,(02):78-79.
黑龙江省野猪线粒体D-Loop区的生物信息学分析
- Title:
- Bioinformatic Analysis of Heilongjiang Wild Boar Mitochondria D-Loop
- 文章编号:
- 1002-2767201002-0078-02
- Keywords:
- wild boar; D-Loop; sequence analysis; phylogenetic tree
- 分类号:
- S813.3
- 文献标志码:
- A
- 摘要:
- Genbank中野猪的线粒体D-Loop区的基因序列进行了SNP分析及分子进化树构建。结果表明：黑龙江野猪线粒体DNA的D-Loop区全长1 145 bp，A+T含量61.3%明显高于G+C含量38.7%；发现了93个多态位点，界定了20种单倍型，野猪mtDNA D-Loop区核苷酸多样性为0.02553，单倍型多样性为0.995，平均核苷酸差异数为15.443；黑龙江野猪与意大利和瑞典野猪亲缘关系最近，与马来西亚野猪的亲缘关系最远，推测黑龙江野猪含有欧洲野猪血统。
- Abstract:
- All of the mitochondrial DNA D-Loop sequences in Genbank currently were analyzed by some tools of bioinformatics.The results showed that，wild boar D-Loop was 1 145 bp，A+T content61.3%was higher thanG+C38.7%，93 SNP and 20 haplotypes were found.The nucleotide diversity of mtDNA D-Loop was 0.02553，the haplotype gene diversity was 0.995，and the average number of nucleotide differences was 15.443.The phylogenetic tree showed that Heilongjiang wild boar was closest to Italian and Sweden wild boar，but farthest to Malaysia wild boar，presumed that Heilongjiang wild boar including Europe wild boar blood.
参考文献/References:
[1] 宋成义，经荣斌，王学峰，等 . 猪 mtDNA 多态性的研究与应用 [J]. 家畜生态， 2002 ， 23（1） ： 75 - 77. [2] 张劲硕.世界猪的种类、分布和现状[J].动物学杂志，2007（1）：7. [3]李丽，于浩，刘娣.东北野猪线粒体DNA序列的测定与分析[J].东北农业大学学报，2008，39（9）：62-65. [4] 韩春梅，高庆华，赵书红，等.新疆野猪mtDNA控制区序列遗传多样性分析[J].安徽农业科学，2008，36（8）：3142-3143，3245.
相似文献/References:
[1]马 红,刘 娣.野猪输卵管上皮细胞的原代培养与生物学特性研究[J].黑龙江农业科学,2012,(10):69.
MA Hong,LIU Di.Research on Oviduct Epithelial Cells Primary Cultureof Wild Boar and Its Biological Characteristics[J].HEILONGJIANG AGRICULTURAL SCIENCES,2012,(02):69.
[2]吴赛辉,何鑫淼,彭福刚,等.东北山林放养野猪不同出栏体重对肉质的影响[J].黑龙江农业科学,2012,(10):72.
WU Sai-hui,HE Xin-miao,PENG Fu-gang,et al.Effect of Wild Boar Slaughter Weight onPork Quality in Northeast Forest[J].HEILONGJIANG AGRICULTURAL SCIENCES,2012,(02):72.
[3]马红,刘娣.黑龙江野猪分布与生物学特性[J].黑龙江农业科学,2012,(11):74.
MA Hong,LIU Di.The Heilongjiang Wild Boar Distribution and Biological Characteristics[J].HEILONGJIANG AGRICULTURAL SCIENCES,2012,(02):74.
备注/Memo
基金项目：“十一五”国家科技支撑计划重点资助项目（2008BAD-B2B02)