ZHANG Yuanye,ZHANG Liguo,ZHANG Ming,et al.Genome-Wide Identification and Bioinformatics Analysis of the WRKY Gene Family in Industrial Hemp[J].HEILONGJIANG AGRICULTURAL SCIENCES,2024,(10):17-26.[doi:10.11942/j.issn1002-2767.2024.10.0017]
工业大麻WRKY家族全基因组鉴定及生物信息学分析
- Title:
- Genome-Wide Identification and Bioinformatics Analysis of the WRKY Gene Family in Industrial Hemp
- 文章编号:
- 3
- Keywords:
- industrial hemp; WRKY; physicochemical propertites of protein; homology analysis; bioinformatics analysis
- 文献标志码:
- A
- 摘要:
- WRKY转录因子是一类具有多种生物学功能的基因，工业大麻中WRKY家族研究较少。本研究使用拟南芥WRKY家族蛋白序列与工业大麻全基因组进行比对，鉴定到34个WRKY家族成员，不均等分布于9条染色体上，同时可分为GroupⅠ、GroupⅡa~GroupⅡe、GroupⅢ共7个亚族，其中GroupⅠ亚族成员数量最多，数量为11个；CsWRKY15包含的结构域最多、CsWRKY34启动子区域的顺式作用元件最多，二者可能行使着较多生物学功能；工业大麻WRKY家族与拟南芥、水稻、玉米、大豆及大麻自身间共线性分析显示，CsWRKYs存在丰富的直系同源基因进化关系。
- Abstract:
- WRKY transcription factors are a class of genes with multiple biological functions, and the WRKY family in cannabis is rarely studied.We used Arabidopsis WRKY family protein sequences to compare with the whole genome of cannabis, and identified 34 WRKY family members, which were unequally distributed on 9 chromosomes, and could be divided into 7 subfamilies, including GroupⅠ, GroupⅡa-GroupⅡe, and GroupⅢ, among which GroupⅠ had the largest number of members, with 11 members. CsWRKY15 contains the most domains, and CsWRKY34 has the most cisacting elements in the promoter region, so they may have more biological functions.The collinearity analysis between the WRKY family of cannabis and Arabidopsis thaliana, rice, maize, soybean and cannabis itself showed that CsWRKYs had rich phylogenetic relationships.This course lays a data foundation for exploring the biological function of cannabis WRKY family.
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GUO Li,WANG Mingze,WANG Diankui,et al.Control Effects of Several Kinds of Pesticides Against ?Psylliodes attenuata Koch in the Field[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(10):73.
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备注/Memo
收稿日期：2024-04-10