CHEN Si,WU Guang-wen,WU Jian-zhong,et al.Research Progress of EST-SSR in Plants[J].HEILONGJIANG AGRICULTURAL SCIENCES,2018,(12):148-152.[doi:10.11942/j.issn1002-2767.2018.12.0148]
植物EST-SSR研究进展
- Title:
- Research Progress of EST-SSR in Plants
- Keywords:
- EST-SSR; plants; molecular markers
- 文献标志码:
- A
- 摘要:
- 基于EST(expressed sequence tags)序列开发的SSR标记具有信息量大、通用性好、开发简单等优越性,是目前一种主要的功能性分子标记。EST-SSR标记来自表达基因,除具备基因组SSR标记所有优势外,可能与基因功能表达具有直接或间接关系,从而强化了SSR标记在遗传研究中的应用。介绍EST-SSR分子标记的特点及开发策略,并对EST-SSR技术在植物遗传多样性研究、遗传图谱构建、功能基因组学研究等方面的进展进行了综述,为多种植物进一步的分子研究奠定了基础。
- Abstract:
- EST-based SSR markers which developed from the coding region have informative,well transferability,easy developed and other advantages,it is one of main functional molecular markers.EST-SSR markers have more advantages than the genomic-derived SSRs because they are part of expressed genes.Thus,EST-SSRs might be involved in gene functioning directly or indirectly,and the ability of SSR markers will be greatly enhanced.In this article,the characteristics and development of EST-SSR molecular markers were introduced,the advance of genetic diversity,genetic linkage map,functional genomics were summarized.The article lays the foundation for further molecular study of various plants.
参考文献/References:
[1]骆蒙,贾继增.植物基因组表达序列标签(EST)计划研究进展[J].生物化学与生物物理进展,2001,28(4): 494-497.[2]Hatey F,Tosser K G,Clouscard-Martinato C,et al.Expressed sequenced tags for genes:A review[J].Genetics Selection Evolution,1998,30(5): 521-541.[3]胡松年.基因表达序列标签(EST)数据分析手册[M].杭州:浙江大学出版社,2005.[4]苏钰.亚麻EST-SSR标记开发及遗传图谱构建[D].哈尔滨:东北农业大学,2011:7.[5]Li Y C,Korol A B,Fahima T,et al.Microsatellites within genes: structure,function,and evolution[J].Molecular Biology and Evolution,2004,21(6): 991-1007.[6]王家麟,孙佳莹,于清岩,等.EST-SSRs的开发及应用研究进展[J].生物信息学,2007(3):140-142.[7]Scott K D,Eggler P,Seaton G,et al.Analysis of SSRs derived from grape ESTs[J].Theoretical and Applied Genetics,2000,100:723-726.[8]Eujayl I,Sorrells M E,Baum M,et al.Assessment of genotypic variation among cultivated durum wheat based on EST-SSRs and genomic SSRs[J].Euphytica,2001,119(1-2):39-43.[9]Thiel T,Michalek W,Varshney R K,et al.Exploiting EST databases for the development of cDNA derived microsatellite markers in barley(Hordeum vulgare L.)[J].Theoretical and Applied Genetics,2003,106:411-422.[10]李宏伟,高丽锋,刘曙东,等.用EST-SSRs研究小麦遗传多样性[J].中国农业科学,2005,38(1):7-12.[11]Cho Y G,McCouch S R,KuiPer M,et al.Integrated map of AFLP,SSLP,and RFLP markers using a recombinant inbred population of rice(Oryza sativa L.)[J].Theoretical and Applied Genetics,1998,97:370-380.[12]Becker J,Heun M.Barley microsatellites:Allele variation and mapping[J].Plant Molecular Biology,1995,27(4):835-845.[13]Liu Z W,Maroof M A S,Biyashev R M.Development of simple sequence repeat DNA markers and their integration into a barley linkage map[J].Theoretical and Applied Genetics,1996,93(5-6):869-876.[14]Kota R,Varshney R,Thiel T,et al.Generation and comparison of EST-derived SSRs and SNPs in Barley[J].Hereditas,2001,135(2-3):145-151.[15]Kantety R V,Rota M L,Matthews D E,et al.Data mining for simple sequence repeats inexpressed sequence tags from barley,maize,rice,sorghum and wheat[J].Plant Molecular Biology,2002,48(5-6):501-510.[16]Faville M J,Vecchies A V,Schreiber M,et al.Funcionally assoeiated molecular genetic marker map construction in perennial ryegrass(Lolium perenne L.)[J].Theoretical and Applied Genetics,2004,110(1):12-32.[17]Torada A,Koike M,Moehidak,et al.SSR-based linkage map with new markers using an intraspecific population of common wheat[J].Theoretical and Applied Genetics,2006,112(6):1042-1051.[18]Roder M S,Korzun V,Wendehake K,et al.A microsatellite map of wheat[J].Genetics,1998,149(4): 2007-2023.[19]Holton T A,Christopher J T,Meclure L,et al.Identification and mapping of polymorphic SSR markers from expressed gene sequences of barley and wheat[J].Molecular Breeding,2002,9(2):63-71.[20]Gupta P K,Rustgi S,Sharma S,et al.Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat[J].Molecular Genetics and Genomics,2003,270(4):315-323.[21]Roder M S,Plaschke J,Konig S U,et al.Abundance,variability and chromosomal location of microsatellites in wheat[J].Molecular and General Genetics,1995,246(3):327-333.[22]Decroocq V,Fave M G,Bordenave L,et al.Development and transferability of apricot and grape EST microsatellite markers across taxa[J].Theoretical and Applied Genetics,2003,106(5): 912-922.[23]安泽伟,赵彦宏,程汉,等.橡胶树EST-SSR标记的开发与应用[J].遗传,2009,31(3):311-319.[24]Di Rienzo A,Peperson A C,Garza J C,et al.Mutational processes of simple-sequence repeat loci in human populations[J].Proceedings of the National Academy of Sciences of the United States of America,1994,91(8):3166-3170.[25]Slatkin M.A measure of population subdivision based on microsatellite allele frequencies[J].Genetics,1995,139(1):457-462.[26]Rossetto M,Mcnaally J,Henr R J.Evaluating the potential of SSR flanking regions for examining taxonomic relationships in the vitaceae[J].Theoretical and Applied Genetics,2002,104(1):61-66.[27]Vendramin E,Dettori M T,Giovinazzi J,et al.A set of EST-SSRs isolated from peach fruit transcriptome and their transportability across Prunus species[J].Molecular Ecology Notes,2007,7(2):307-310.[28]邓科君,张勇,熊丙全.药用植物丹参EST-SSR标记的鉴定[J].药学学报,2009,44(10):1165-1172.
相似文献/References:
[1]赵 迪,刘仁泽,郭长虹,等.植物高温抗性转录因子基因工程研究进展[J].黑龙江农业科学,2014,(06):130.
ZHAO Di,LIU Renze,GUO Changhong,et al.Genetic Engineering Advance for Heat Tolerance Transcription Factors of Plants[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(12):130.
[2]王志坤. 黑龙江省西北部地区土壤有机质下降的影响及改良对策[J].黑龙江农业科学,2013,(01):36.
WANGZhi-kun.EffectofSoilOrganicMatterDeclineandItsImprovementCountermeasuresofNorthwestRegioninHeilongjiangProvince[J].HEILONGJIANG AGRICULTURAL SCIENCES,2013,(12):36.
[3]秦春林.城市公园植物生态景观设计的探讨[J].黑龙江农业科学,2013,(06):90.
QINChun-lin.DiscussionontheDesignofPlantsEcologicalLandscapeinUrbanPark[J].HEILONGJIANG AGRICULTURAL SCIENCES,2013,(12):90.
[4]岳莉然,高春义,李永峰.人工湿地中植物的生理生态研究进展[J].黑龙江农业科学,2011,(06):143.
YUE Li-ran,GAO Chun-yi,LI Yong-feng.Research Progress on the Physiology andEcology of Plants in Constructed Wetland[J].HEILONGJIANG AGRICULTURAL SCIENCES,2011,(12):143.
[5]赵 芒,牛雅静,马樱宁.中国古典园林的季相景观[J].黑龙江农业科学,2011,(09):79.
ZHAO Mang,NIU Ya-jing,MA Ying-ning.Seasonal Landscape in Classical Chinese Garden[J].HEILONGJIANG AGRICULTURAL SCIENCES,2011,(12):79.
[6]王 芳.抑制消减杂交技术在植物病害研究中的应用[J].黑龙江农业科学,2011,(11):136.
WANG Fang.Application of the Suppression Subtractive Hybridization Technique in Plant-Diseases[J].HEILONGJIANG AGRICULTURAL SCIENCES,2011,(12):136.
[7]蒋冬月,李永红.植物挥发性有机物的研究进展[J].黑龙江农业科学,2011,(11):143.
JIANG Dong-yue,LI Yong-hong.Review on Volatile Organic Compounds of Plant[J].HEILONGJIANG AGRICULTURAL SCIENCES,2011,(12):143.
[8]孙 羽.丛枝菌根真菌在植物生态系统中的调控作用[J].黑龙江农业科学,2011,(08):128.
SUN Yu.Role of Arbuscular Mycorrhizal Fungi in Plant Ecosystems[J].HEILONGJIANG AGRICULTURAL SCIENCES,2011,(12):128.
[9]相静波.中国古典园林中植物的应用探讨[J].黑龙江农业科学,2010,(08):101.
XIANG Jing-bo.Preliminary Analysis of the Application of Garden Plants in Classical Gardens[J].HEILONGJIANG AGRICULTURAL SCIENCES,2010,(12):101.
[10]张勇.植物配置在城市园艺设计中的问题浅析[J].黑龙江农业科学,2013,(10):76.
ZHANG Yong.Analysis on Problems of Plant Configuration in Urban Gardening Design[J].HEILONGJIANG AGRICULTURAL SCIENCES,2013,(12):76.
备注/Memo
收稿日期:2018-08-24