[1]孙培元.玉米穗行数相关基因GRMZM2G398848的生物信息学分析[J].黑龙江农业科学,2016,(11):4-8.[doi:10.11942/j.issn1002-2767.2016.11.0004]
　SUN Pei-yuan.Bioinformatics Analysis of the Gene GRMZM2G398848 Related to Kernel Row Number in Maize[J].HEILONGJIANG AGRICULTURAL SCIENCES,2016,(11):4-8.[doi:10.11942/j.issn1002-2767.2016.11.0004]
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玉米穗行数相关基因GRMZM2G398848的生物信息学分析

《黑龙江农业科学》[ISSN:1002-2767/CN:23-1204/S] 卷: 期数: 2016年11 页码: 4-8 栏目: 出版日期: 2016-11-10
Title:
Bioinformatics Analysis of the Gene GRMZM2G398848 Related to Kernel Row Number in Maize
文章编号:
11-0004-04
作者:
孙培元
（黑龙江省农业科学院 齐齐哈尔分院，黑龙江 齐齐哈尔 161041）
Author(s):
SUN Pei-yuan
（Qiqihar Branch of Heilongjiang Academy of Agricultural Sciences,Qiqihar,Heilongjiang 161041）
关键词:
玉米; 穗行数; GRMZM2G398848基因; 生物信息学
Keywords:
maize;  kernel row number;  GRMZM2G398848;  bioinformatics analysis
分类号:
S513
DOI:
10.11942/j.issn1002-2767.2016.11.0004
文献标志码:
A
摘要:
研究采用生物信息学的方法，对一个玉米穗行数相关基因GRMZM2G398848的理化性质、跨膜结构域、功能域、二级结构、三级结构等方面进行了预测和分析。结果表明：该基因编码蛋白由9 195个原子构成，其相对分子质量为65.681 1 kDa，是一个不稳定亲水性蛋白，包含1个F-box超亲家族和2个AMN1超亲家族，无跨膜结构域，无信号肽，由α螺旋、无规则卷曲、延伸链和β折叠构成。
Abstract:
The characters of the gene GRMZM2G398848 related to kernel row number was analyzed by bioinformatics tools,including the physical and chemical properties,transmembrane domain,subcellular localization,functional domain and 3D structure.The results showed that this protein was an unstable hydrophilic protein containing 9 195 atoms.The molecular weight of the protein containing a F-box superfamily and two AMN1 superfamilies was 65.681 1 kDa.It was no signal peptide,no transmembrane domain,and contained alpha-helix,random coil,extended strand and β folding.

参考文献/References:

[1] 白胜双 , 彭勃 , 王超楠 . 玉米穗行数遗传基础的研究进展 [J]. 天津农业科学 ,2016 （ 5 ） :8-10.

[2]Lu Ming，Xie Chuanxiao，Li Xinhai ,et al.Mapping of quantitative trait loci for kernel row number in maize across seven environments[J].Molecular Breeding,2011,28(2):143-152.

[3]周强,王平喜,程备久,等.玉米穗行数性状QTL的元分析[J].玉米科学,2014,22(2): 35-40.

[4]Liu Lei,Du Yanfang,Shen Xiaomeng,et al.KRN4 controls quantitative variation in maize kernel row number[J].Plos Genetics,2015,11(11)：e1005670.

[5]Brown P J,Upadvayula N,Mahone G S,et al.Distinct genetic architectures for male and female inflorescence traits of maize[J].Plos Genetics,2011,7(11):1276-1280.

[6]张焕欣,翁建峰,张晓聪,等.玉米穗行数全基因组关联分析[J].作物学报,2014（1）:1-6.

[7]于滔,王成波,曹士亮,等.玉米bZIP转录因子的生物信息学分析[J].黑龙江农业科学,2016(4):1-5.

[8]孙培元,王俊强,韩业辉,等.玉米RNA结合蛋白GRMZM2G052926基因的生物信息学分析[J].黑龙江农业科学,2016(3):7-12.

[9]习银生,杨丽.2014年玉米市场形势分析与2015年展望[J].农业展望,2015,11(1):8-14.

[10]杨军,仇焕广,董婉璐,等.2014年国内外玉米市场分析及2015年展望[J].农业展望,2015,11(3):10-14.

[11]杨军,仇焕广,董婉璐,等.2013年国内外玉米供需分析及2014年展望[J].农业展望,2014,10(2):4-8.

[12]张焕欣.玉米穗行数关联分析与连锁定位[D].北京：中国农业科学院,2014.

[13]Dharmasiri N,Dharmasiri S,Estelle M.The F-box protein TIR1 is an auxin receptor[J].Nature,2005,435: 441-445.

[14]Gray W M,del Pozo J C,Walker L,et al.Identification of an SCF ubiquitin-ligase complex required for aulin response in Arabidopsis thaliana[J].Genes & Development,1999,13: 1678-1691.

[15]Cardozo T,Pagano M.The SCF ubiquitin ligase: insights into a molecular machine[J].Nature reviews Molecular cell biology,2004,5:739-751.


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备注/Memo

收稿日期：2016-08-21

作者简介：孙培元（1991-），男，黑龙江省绥化市人，硕士，研究实习员，从事玉米分子遗传育种研究。E-mail：562337271@qq.com。

更新日期/Last Update: 2017-01-21