YU Tao,WANG Cheng-bo,CAO Shi-liang,et al.Bioinformatics Analysis of the bZIP Transcription Factor in Maize[J].HEILONGJIANG AGRICULTURAL SCIENCES,2016,(04):1-5.[doi:10.11942/j.issn1002-2767.2016.04.0001]
玉米bZIP转录因子的生物信息学分析
- Title:
- Bioinformatics Analysis of the bZIP Transcription Factor in Maize
- 文章编号:
- 1002-2767(2016)04-0001-05
- Keywords:
- maize; bZIP; transcription factor; bioinformatics
- 分类号:
- S511
- 文献标志码:
- A
- 摘要:
- 碱性亮氨酸拉链(Basic leucine zipper,bZIP)转录因子家族是真核生物中分布最为广泛、结构极其保守的家族之一,能够参与多种生物学过程,但有些bZIP转录因子的功能还未知。研究采用生物信息学方法,对一个玉米bZIP转录因子的理化性质、跨膜结构域、疏水性/亲水性、亚细胞定位及功能域等方面进行了预测和分析。结果表明:该玉米转录因子是一种不稳定的亲水、酸性蛋白,无信号肽序列,无跨膜结构域,亚细胞定位在细胞核上,主要参与信号转导。本研究结果为进一步研究该转录因子功能奠定了基础。
- Abstract:
- Basic leucine zipper transcription factors are one of the most extensively and conserved transcription factors in the eukaryote proteins and involved in various biological functions,but some of the bZIP transcription factor function is unknown yet.Some characters of a bZIP transcription factor in maize,including the physical and chemical properties,transmembrane domain,hydrophobicity/hydrophilicity,subcellular localization plus the functional domain were analyzed by bioinformatics tools.The results showed that this maize bZIP transcription factor was an unstable hydrophilic acidic protein.It was no signal peptide,no transmembrane domain,located in the nucleus,and involved in signal transduction.The results laid a foundation for further study on the function of this bZIP transcription factor in maize.
参考文献/References:
[1]Bartels D,Nelson D E.Approaches to improve stress tolerance using molecular genetics[J].Plant Cell and Environment,1994,17:659-667. [2]Shinozaki K,Yamaguchi-Shinozaki K.Molecular responses to dehydration and low temperature: differences and cross talk between two stress signaling pathways[J].Current Opinion in Plant Biology,2000,3:217-223. [3]Bray E A.Molecular responses to water deficit[J].Planhysiol,1993,103:1035-1040. [4]Bohnert H J,Nelson D E,Jensen R G.Adaptations to environmental stresses[J].The Plant Cell,1995,7:1099-1111. [5]Zhang J Z,Creelman R A,Zhu J K.From laboratory to field.Using information from Arabidopsis to engineer salt,cold and drought tolerance in crops[J].Plant Physiol,2004,135:615-621. [6]Schütze K,Harter K,Chaban C.Post-translational regulation of plant bZIP factors[J].Trends Plant Sci,2008,13: 247-255. [7]Nakashima K,Ito Y,Yamaguchi-Shinozaki K.Transcriptional regulatory networks in response to abiotic stresses in Arabidopsisand grasses[J].Plant Physiol,2009,149:88-95. [8]Lopez-Molina L,Mongrand S,Chua N.A postgermination developmental arrest checkpoint ismediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis[J].Proc Natl Acad Sci USA,2001,98: 4782-4787. [9]Zou M J,Guan Y C,Ren H B,et al.A bZIP tran-scription factor,OsABI5,is involved in rice fertility and stress tolerance[J].Plant Mol Biol,2008,66:675-683. [10]Liao Y,Zou H F,Wei W,et al.Soybean GmbZIP44,GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis[J].Planta,2008,228(2):225-240. [11]Stan Kovic B,Vian A,Henry-Vian C,et al.Molecular cloning and characterization of a tomato cDNA encoding a systemically wound-inducible bZIP DNA binding protein[J].Planta,2000,212(1):60-66. [12]Wang Y C,Gao C,Liang Y,et al.A novel bZIP gene from Tamarix hispida mediates physiological responses to salt stress in tobacco plants[J].Journal of Plant Physiology,2010,167(3):222-230. [13]Yang Q,Popova O V,Süthoff U,et al.The Arabidopsis basic leucine zipper transcription factor AtbZIP24 regulates complex transcriptional networks involved in abiotic stress resistance[J].Gene,2009,436:45-55. [14]Wei K F,Chen J,Wang Y M,et al.Genome-wide analysis ofbZIP-encoding genes in maize[J].DNA Res,2012,19: 463-476. [15]Ying S,Zhang D F,Fu J,et al.Cloning and characterization of a maizebZIP transcription factor,ZmbZIP72,confers drought and salt tolerance in transgenic Arabidopsis[J]. Planta,2012,235:253-266. [16]Yan F,Deng W,Wang X M,et al.Maize (Zea maysL.) homologue of ABA-insensitive (ABI) 5 gene plays a negative regulatory role in abiotic stresses response[J].Plant Growth Regul,2012,68: 383-393. [17]王策,杨艳歌,吕维涛,等.玉米A亚族bZIP转录因子基因ZmbZIP81的克隆、表达与功能分析[J].作物学报,2014,40(9): 1549-1556. [18]李横江.玉米ZmbZIP基因的克隆及表达模式分析[J].吉林农业科学,2014,39(2):25-27,46.
相似文献/References:
[1]王静.西昌地区玉米自交系苗期耐低磷特性鉴定[J].黑龙江农业科学,2013,(02):5.
WANG Jing.Identification of Resistance to Low-phosphorus Characteristics of Maize Inbred Lines at Seedling Stage in Xichang Area[J].HEILONGJIANG AGRICULTURAL SCIENCES,2013,(04):5.
[2]石凤梅,马立功.黑龙江省玉米大斑病菌小种生理分化的研究[J].黑龙江农业科学,2013,(02):63.
SHI Feng-mei,MA Li-gong.Study on Physiological Race Differentiation of Exserohilum turcicum in Heilongjiang Province[J].HEILONGJIANG AGRICULTURAL SCIENCES,2013,(04):63.
[3]孙广全,焦少杰,王黎明,等.乌克兰玉米自交系芽期耐旱性鉴定[J].黑龙江农业科学,2014,(11):4.
SUN Guang-quan,JIAO Shao-jie,WANG Li-ming,et al.Drought Tolerance Identification of Ukrainian Maize Inbred Lines at Bud Stage[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(04):4.
[4]马延华,孙德全,李绥艳,等.玉米自交系灌浆期抗倒性评价及抗倒性状的相关分析[J].黑龙江农业科学,2014,(07):5.
MA Yan-hua,SUN De-quan,LI Sui-yan,et al.Evaluation of Lodging Resistance and Correlation Analysis of Lodging Resistance Characters for Maizenbred Lines During Grain filling Period[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(04):5.
[5]杨耿斌,刘兴焱,王立春,等.黑龙江早熟地区深松对玉米产量及土壤状态的影响[J].黑龙江农业科学,2014,(07):23.
YANG Geng-bin,LIU Xing-yan,WANG Li-chun,et al.Effect of Subsoiling on Maize Yield and Soil Characteristics in Earlymaturing District of Heilongjiang Province[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(04):23.
[6]王宇先.寒地半干旱地区膜上精播技术对玉米生长发育的影响[J].黑龙江农业科学,2014,(07):29.
WANG Yu-xian.Effect of Planting in Mulching Film on the Growth and Development of Maize Plant in Cold and Semi Arid Area[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(04):29.
[7]刘志华,盖兆雪,李晓梅,等.秸秆还田对玉米产量形成及土壤肥力的影响[J].黑龙江农业科学,2014,(07):42.
LIU Zhi-hua,GAI Zhao-xue,LI Xiao-mei,et al.Effect of Straw Return on Maize Yield Components and Soil Fertility[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(04):42.
[8]林红,何晶丽.玉米在畜牧养殖业中的有效利用[J].黑龙江农业科学,2014,(07):77.
LIN Hong,HE Jing-li.Effective Utilization of Maize in Animal Husbandry[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(04):77.
[9]林 红,孙德全,李绥艳,等.玉米单倍体诱导系对不同类群F1的诱导率评价[J].黑龙江农业科学,2014,(06):12.
[10]张崎峰,蔡鑫鑫,李金良,等.黑龙江省高纬寒地大垄双行栽培模式下玉米品种筛选试验[J].黑龙江农业科学,2014,(06):22.
ZHANG Qifeng,CAI Xinxin,LI Jinliang,et al.Screening Test of Maize Varieties under the Mode of Double Row Sowing with Big Ridge in High Latitude and Cold Region of Heilongjiang Province[J].HEILONGJIANG AGRICULTURAL SCIENCES,2014,(04):22.
备注/Memo
收稿日期: 2015-12-15 基金项目:黑龙江省农业科技创新工程资助项目(2012ZD026) 第一作者简介:于滔(1982-),女,山东省黄县人,博士,助理研究员,从事玉米生物技术的相关研究。E-mail:yutaoweiwei@163.com。